MmuEX6100856 @ mm10
Exon Skipping
Gene
ENSMUSG00000026882 | 4930568D16Rik
Description
RIKEN cDNA 4930568D16 gene [Source:MGI Symbol;Acc:MGI:1923109]
Coordinates
chr2:35354218-35362367:-
Coord C1 exon
chr2:35362320-35362367
Coord A exon
chr2:35355508-35355645
Coord C2 exon
chr2:35354218-35355036
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTTGCTCAACAGAAA
3' ss Score
9.11
5' ss Seq
AAAGTATGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
GAAAGATCACTTAGAAGAACCTCATCTCTCCACCTGGTTTGATCCAAA
Seq A exon
AAAACGTCCTGATGTTATAGCAACAACTGGTTGGCTCGCTCCAGTCTTATGGGAAGGAACTTACAACAGAGAAGTTCTAGAACAATATTATAAGAGACTGAACATTACCATAGGCTTGGCTGTCTTCGCTACTGGAAA
Seq C2 exon
CTTTTCAAAAGAGCCCCTGAGACGCTTCATAAAGTCTGCTGATAAGTACTTCATGGTGGGCTACAATGTTATTTTCTACATATTGGCTGACAGCACGTACAATCTACCATACTTTGAGTTGGGTCCTCTTCGGACACTTAAAACATGGAGGCTATTTGAGGAAGAGATGTGTCAAGACTGTAATCTCAGAAACATGAATAACATGCATAGCAAAATCATACAGTGTATACAATATGAAGTCAACTTTCTCTTCATGATGGCTGTGAACCAGACCTTCAAGAACAACTTTGGAGTAGAAACCTTGGGCAAATCTGTAGCTCAACTCCATGCATGGTGGTATTTTAAAAAGCCCAGAGACTTCCCCTATGAGAGAAGAACTAAATCTGCAGCTTTCATCCCCTTTGAAAAAGGAGATTTCTATTACCACAGGGCCATTGTTGGCGGCACACCCCTAAACGTCTTAAATCTAATTGAACAATATATAAAGGGAATTACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026882-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(5.1=100)
A:
PF034148=Glyco_transf_6=FE(14.8=100)
C2:
PF034148=Glyco_transf_6=PD(70.1=99.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCATCTCTCCACCTGGTT
R:
ACACTGTATGATTTTGCTATGCATGT
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types