BtaEX6045965 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B8Y5]
Coordinates
chr11:92215374-92221901:-
Coord C1 exon
chr11:92221813-92221901
Coord A exon
chr11:92217251-92217391
Coord C2 exon
chr11:92215374-92216034
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTGTCTGTTCAACAGAAA
3' ss Score
8.23
5' ss Seq
AAAGTAGGC
5' ss Score
5
Exon sequences
Seq C1 exon
GTGAGCAGATTACTCTTACATGATTTTCATTTTGTACCTAGGGATCAAGAAACAGAAGAACCTCAGCTCTCAGACTGGTTTAATCCTAA
Seq A exon
AAAACGTCCTGATGTAATAACAACAACCAACTGGCTTGCTCCAGTCATATGGGAAGGAACTTACAATAGACCGGTCCTGGAAAAATACTACAAAAGGCTGAACATCACCATAGGCTTGGCTATAATATGTGTTCCTGGAAA
Seq C2 exon
GTTTTCAAATCAGAGCTTGACTGAGTTCATCCAATCTGCAAATAAGCACTTCATGTTTGGCTACAATGTTATCTTTTACATCTTGCTGGATGGCTTCTCCACCATGCCTTCCATAGTGTTAGGTCCCCTTCGAACATTTAAACTATTTTTATTGGTCAAAAGTGGTATAGAGAAAGATTTTTATTTCACATACATGACGAACTTATTTAACTACATCATATCACACATCCAGTATGAAGTCAACTTTCTCTTCGTTATGAATGCAGACCAGATCTTCAAGGACGATTTTGGAGTGGAAACCCTGGGAAAATCTGTAGCTCAACTTAGTGCATGGTGGTATTTTAAAGATGGTGACACTTTCCCTTATGAGAGAAGAAGTAAATCAGCAGCTTTCATCCCTTTTGAAGAGGGAGATTTCTACTACCATAGTGCAATTTTTGGTGGCACAGTTGAGGAGGTTTTAAACCTCATTGAAGAATATCAGAAAGGAGTTATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039201-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(8.2=80.0)
A:
PF034148=Glyco_transf_6=FE(16.1=100)
C2:
PF034148=Glyco_transf_6=FE(75.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTCAGACTGGTTTAATCCT
R:
ACTGGATGTGTGATATGATGTAGT
Band lengths:
258-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]