DreEX6029590 @ danRer10
Exon Skipping
Gene
ENSDARG00000011283 | CABZ01024426.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1QJ68]
Coordinates
chr2:56641206-56650457:-
Coord C1 exon
chr2:56650432-56650457
Coord A exon
chr2:56649664-56649798
Coord C2 exon
chr2:56641206-56641896
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGCGTGCGTCTGTGATACAGTCG
3' ss Score
5.03
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TACAATCAGCCCAGTGTGCTAAAAGG
Seq A exon
TCGGACAGATGTTGTTTCTCTGTCACCATGGCTTGCTCCAATCATTTGGGAGGGGACTTTTGACCCAGCGCTGATTGATTTAATCTACAAACAATATAACTTCACTATAGCCACCACTGTCTTCGCTTTGGGAAA
Seq C2 exon
ATACACACGATTCCTCAAAGATCTTCTGGAGTCGGCGGAGCAGCATTACTTCATTGGATATCGAGTGCATTATTACCTGTTCACAGATAAACCAGAAGCAGTTCCCGAAGTGAAGATGTCAGAAAACCATCGCTTGACCGTCAGGAGAGTCCCCAGTTTGGACAGATGGCAGGACATCAGCATGGGCAGGATGGAGATACTGGAAAAACTCATAGCAAACGAACTAATAAACGAATCCGACTTTATTTTCTGCCTTGACGTGGATACTAAGTTCTATGGCCACTGGGGAGCAGAAACTTTGGGTCGACTGGTGGGTATAATTCATCCCTGGTTTTATGACTTTCCGAGGAATAAATTCACATATGAACGAAGACGGGAATCTGCAGCGTTCATTCCTGATGGAGAAGGAGATTATTATTACACCGCTGCAGCATTCGGTGGCATGTTGGAGGACGTTTATCAGCTGACTAAAACCTGCCGTCAGCAGATGAATATCGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011283-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(2.8=88.9)
A:
PF034148=Glyco_transf_6=FE(16.0=100)
C2:
PF034148=Glyco_transf_6=PD(80.8=98.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCCAGTGTGCTAAAAGG
R:
TCGTTTGCTATGAGTTTTTCCAGT
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]