RnoEX0038380 @ rn6
Exon Skipping
Gene
ENSRNOG00000042373 | Ggta1l1
Description
glycoprotein, alpha-galactosyltransferase 1-like 1 [Source:RGD Symbol;Acc:1565200]
Coordinates
chr3:14556033-14563986:-
Coord C1 exon
chr3:14563939-14563986
Coord A exon
chr3:14557129-14557266
Coord C2 exon
chr3:14556033-14556702
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTGCTCAACAGAAA
3' ss Score
10
5' ss Seq
AAAGTAGGC
5' ss Score
5
Exon sequences
Seq C1 exon
GAGAGATCATCTGGAAGAACCTCAGCTCGAGTCTTGGTTTAATCCAAA
Seq A exon
AAAACGTCCTGATGTTATAGCAACAACTGGTTGGCTCGCTCCAGTCTTATGGGAAGGAACTTATGACAGAGAAGTTCTAGAACAATATTATAAGAGACTGAACATCACCGTAGGCTTGGCTGTCTTTGCTACTGGAAA
Seq C2 exon
CTTTTCAAGTGAGTCCCTGAGACGCTTCATAAAATCTGCCAATAAGTACTTCATGGTTGGCTACAATGTTATTTTCTACATCTTGGCTGATGGCACGAGCAATCTACCATACCTTGAGTTGGGTCCTCTTCGGACACTTAAAATGTGGAGGCTCTCTGGAGAAGAGATGACTTATGAAGACAGTAATCTCAGGAACATGAATAACATGCGATACAAAATCATGGAACATATTCAATATGAAGTCAACTTTCTCTTCGTGATGACTGCGAACCAGATCATCAAGAACCACTTTGGAGTAGAAACCTTGGGCAGATCTGTAGCTCAACTCCATGCATGGTGGTATTTCAAACAGCCCAGAGAGTTCCCTTATGAGAGAAGAAGGAAAGCCTCAGCTTTCATTGCCTTCGAAGAGGGAGATTTCTATTACCACAGTGCCATTGTTGGTGGCACGCCCCTAGATGTCTTAGATCTCATCGAACACTATATAAAGGGAATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042373_MULTIEX1-3/3=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(5.2=100)
A:
PF034148=Glyco_transf_6=FE(14.9=100)
C2:
PF034148=Glyco_transf_6=PD(71.8=99.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAGCTCGAGTCTTGGTT
R:
TGTTCCATGATTTTGTATCGCATGT
Band lengths:
258-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]