HsaEX6063919 @ hg19
Exon Skipping
Gene
ENSG00000204007 | GLT6D1
Description
glycosyltransferase 6 domain containing 1 [Source:HGNC Symbol;Acc:23671]
Coordinates
chr9:138515502-138523324:-
Coord C1 exon
chr9:138523277-138523324
Coord A exon
chr9:138517915-138518052
Coord C2 exon
chr9:138515502-138516516
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACTTGGTTCTTGTTCCACAGAAA
3' ss Score
9.31
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAATCACCAAGTAGAAGAACTTCGGCTCTCAGACTGGTTTCATCCTAG
Seq A exon
AAAACGCCCTGATGTTATAACGAAAACAGACTGGCTCGCTCCTGTCCTATGGGAAGGGACTTTCGACAGGCGGGTCCTGGAAAAACATTACAGAAGGCGGAATATCACTGTGGGCCTGGCCGTCTTTGCTACTGGCAG
Seq C2 exon
GTTTGCAGAGGAGTACCTGAGGCCGTTCCTACACTCCGCAAATAAGCACTTCATGACAGGCTACCGAGTGATCTTCTACATCATGGTGGACGCCTTCTTCAAGCTGCCTGACATAGAGCCCAGTCCTCTTCGAACGTTCAAAGCATTTAAAGTGGGCACCGAGAGGTGGTGGCTCGATGGCCCCCTGGTGCATGTGAAGAGCCTGGGTGAACACATCGCCAGTCACATCCAGGACGAGGTGGACTTCCTCTTCAGCATGGCTGCCAACCAGGTCTTCCAGAATGAGTTCGGGGTGGAGACCCTGGGCCCGTTGGTGGCCCAGCTCCACGCCTGGTGGTATTTCAGAAACACCAAGAACTTCCCTTATGAGAGGAGGCCGACCTCAGCAGCTTGCATCCCGTTTGGACAGGGAGATTTCTATTATGGCAACTTGATGGTTGGTGGCACACCCCATAATATTTTAGACTTCATCAAAGAATATCTGAACGGAGTTATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204007-'3-6,'3-4,4-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(6.1=100)
A:
PF034148=Glyco_transf_6=FE(17.6=100)
C2:
PF034148=Glyco_transf_6=PD(72.5=99.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCTCTCAGACTGGTTTCA
R:
GGATGTGACTGGCGATGTGTT
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)