RnoEX0038809 @ rn6
Exon Skipping
Gene
ENSRNOG00000027900 | Glt6d1
Description
glycosyltransferase 6 domain containing 1 [Source:RGD Symbol;Acc:1311348]
Coordinates
chr3:3255638-3260588:-
Coord C1 exon
chr3:3260541-3260588
Coord A exon
chr3:3256900-3257037
Coord C2 exon
chr3:3255638-3256506
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTGTGTGTCCCATAGGAG
3' ss Score
10.62
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GAACCACCAGGAAGAGGAACTTCCGCTCTCAGACTGGTTTGACCCCAG
Seq A exon
GAGACGCTTGGATGTTATCACGACCACAGACTGGCTGGCCCCTGTCATATGGGAAGGCACCTTTGACAGAAAGGTCCTGGAGAAATATTACCATAAGCAGAACATCACCATGGGCTTGACTGTGTTTGCTGTCAGCAG
Seq C2 exon
TTTCAATGGCCAGTACCTGGACCCATTCTTGCAATCGGCCAGCAAGTTCTTCATGCCTGGCTATCGGGTGATCTTCTACATCATGGTGGATAAGTCCCTGAAGTTACCTGAAATGGGGCACAACCCTCTACAGTCCTTCCAAGTACTCGTAGTAAGCCAGGAGAGGCAGTGGAGCGACTTTGACCTCATGCGCATGACAGTCTTGTCCAAGCACATCCGGGAGCACATCAGGTTTGAAGTGGACTTCCTCTTCGTCATGAGTGTCAACATGGTCTTCCAGAATGTGTTTGGGGTGGAGACTCTGAGCACGTCTGTGGCTCAGCTCCATGCTTGGTGGTATTTCCGAAAGACGACGCATCTCCCCTATGAGAGGAGACCTACATCAGCGGCCTACATCCCCTTTGGCCTGGGGGACTTCTATTATGCTGGTGCCATTATAGGTGGAGTGCCCTTTCAGGTCTTGGACTTCACTCATCAATACTTGAAAAGTGTTATTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027900-'5-6,'5-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(5.5=100)
A:
PF034148=Glyco_transf_6=FE(15.9=100)
C2:
PF034148=Glyco_transf_6=PD(76.2=98.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCTCAGACTGGTTTGACC
R:
CGGATGTGCTTGGACAAGACT
Band lengths:
244-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]