MmuEX6099644 @ mm10
Exon Skipping
Gene
ENSMUSG00000036401 | Glt6d1
Description
glycosyltransferase 6 domain containing 1 [Source:MGI Symbol;Acc:MGI:1918353]
Coordinates
chr2:25793859-25811055:-
Coord C1 exon
chr2:25811008-25811055
Coord A exon
chr2:25795144-25795281
Coord C2 exon
chr2:25793859-25794726
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGCATTTGTGTGTCCCTAGGAG
3' ss Score
10.41
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
GAACCACCAGGAAGAGGAACTTCTGCTCTCAGACTGGTTTAACCCCAG
Seq A exon
GAGACGCCTGGATGTCATCACGACCACAGACTGGCTGGCCCCCATCATATGGGAAGGCACCTTTGACAGAAAGGTCCTGGAGACATATTTCAGGAAGCAGAACATCACCGTGGGTTTGGCTGTGTTTGCTGTTGGCAG
Seq C2 exon
TCTCACTGACAAGTACCTGGACCCATTCTTGCAATCAGCCAGCAAGTTCTTCATGCCTGGCTATCGAGTGATCTTCTACATCATGGTGGATAAGTACCTGCAGCTACAAGAAATGGAGCACAACCCTCTGCAATCCTTTCAAGTACTCAAAATAGGCAAGGAGAGGTGGTGGAGCAACTTTGACCTCATGCGCATGAAAATCTTGTCTGAGCACATCCGGGATCACATCAGATATGAAGTGGATTTCCTCTTCAGCATGAACATCAACATGGTCTTCCAAAGTGAGTTTGGGGTAGAGACTCTGAGCACATCTGTGGCTCAGCTCCATCCTTGGTGGTATTTCCGAAAGAGGACGAATCTACCCTATGAGAGGAAACCTACATCAGTAGCCCACATTCCCTTTGGACTGGGGGACTTCTACTATGCTGGTGCCATTATAGGTGGAGTGCCCTTTCAGGTCTTGGACTTTGCTCAGCAATACTTGAAAGGTGTTTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036401-'2-11,'2-10,5-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(5.5=100)
A:
PF034148=Glyco_transf_6=FE(15.8=100)
C2:
PF034148=Glyco_transf_6=PD(75.9=98.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCAGACTGGTTTAACCCC
R:
GATGTGATCCCGGATGTGCTC
Band lengths:
253-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types