BtaEX6047071 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020249 | GLT6D1
Description
glycosyltransferase 6 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23671]
Coordinates
chr11:103317236-103319659:-
Coord C1 exon
chr11:103319612-103319659
Coord A exon
chr11:103318761-103318898
Coord C2 exon
chr11:103317236-103318087
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCTTTTGTTCAACAGAGG
3' ss Score
8.25
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAAAAATCAAGAAGAAGAACTTGAGCTCTCAGACTGGTTCAAGCCCAG
Seq A exon
AGGACGCCCCGATGTGATCACGACCACGAGCTGGCTTGCTCCCGTTGTCTGGGAAGGCACTTTCAGCAGAAAGATGCTGGAAAAACACTACAGAAGGCAGAATTTCACAACGGGCTTGGCCGTCTTTGCTACTGGCAG
Seq C2 exon
GCTTGCAGATCCGTACCTGGAGCTGTTCTTGAACTCGGCAAATAAGTACTTCCTGACTGGCTACAGAGTGATCTTCTACATTATGATGGACACCTTCATCAAGCTGCCCCAGATCAAGTGGGAGCCCCTCCGACAGTTCAAAGTGTTCATCGTCACTGAGAGCAGATGGTGGGACAACGACGTCGTGCGCATGAAGAGCTTGGCCAAGCACATTATCTGGGACATCCAGGGCGAGGTCGACTTCCTTTTCAGCATGACCGTCACCCAGATCTTCCAGAACAATGTGGGCGTGGAGGTCCTGGGCGAGTTGGTGGCTCAGCTCCATGGCTGGTGGTACTTCAAGGACCGTGCGAGTTTCCCCTACGAGAGGAGGCCCAAGTCGGCAGCTTACATCCCATTTGGCCAGGGCGATTTCTACTACGATGGTGCATTTGTGGGCGGCACACCCCAGGAGGTCCTGAACCTCGCGGAGGAGTACCTGAATGGAGTCATCCACGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020249-'7-7,'7-4,8-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(5.5=100)
A:
PF034148=Glyco_transf_6=FE(15.9=100)
C2:
PF034148=Glyco_transf_6=PD(76.2=99.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGACTGGTTCAAGCCCA
R:
CCCAGATAATGTGCTTGGCCA
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]