MmuEX6101595 @ mm9
Exon Skipping
Gene
ENSMUSG00000035000 | Dpp4
Description
dipeptidylpeptidase 4 [Source:MGI Symbol;Acc:MGI:94919]
Coordinates
chr2:62217154-62223299:-
Coord C1 exon
chr2:62223231-62223299
Coord A exon
chr2:62217334-62217386
Coord C2 exon
chr2:62217154-62217226
Length
53 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGATTTCTTTTGCAGCAA
3' ss Score
10.16
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAAGCTTTGGATATCATTCAGTGTCACCTGACCGACTGTTTGTTCTCTTGGAATACAACTACGTGAAG
Seq A exon
CAATGGAGACATTCCTACACAGCTTCATACAACATTTATGATGTGAATAAAAG
Seq C2 exon
ACAGCTGATCACAGAAGAGAAGATTCCAAATAATACACAGTGGATCACATGGTCACCAGAAGGTCATAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035000-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(3.8=60.9)
A:
PF0093016=DPPIV_N=FE(4.6=100)
C2:
PF0093016=DPPIV_N=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCTTTGGATATCATTCAGTGT
R:
CCTTCTGGTGACCATGTGATCC
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: