GgaEX1020893 @ galGal4
Exon Skipping
Gene
ENSGALG00000011110 | DPP4
Description
dipeptidyl peptidase 4 [Source:RefSeq peptide;Acc:NP_001026426]
Coordinates
chr7:20645494-20647929:+
Coord C1 exon
chr7:20645494-20645568
Coord A exon
chr7:20647705-20647757
Coord C2 exon
chr7:20647857-20647929
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTAAACTAATTCTCTTGCAGTTG
3' ss Score
8.44
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AGTATACATGAGGCAACAACAGCTATATTGTCCCCTGACCAGAGGTTTGCTCTTCTGCAGTACAAGTATGAAAAG
Seq A exon
TTGTGGAGGCATTCCTACACAGCTTCATATCACATCTATGATTTCAATACAAG
Seq C2 exon
CTCCATCTTAGATGATGCACTACTACCTAATGACACACAATATATATCCTGGTCACCTGTTGGTCACAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(3.8=56.0)
A:
PF0093016=DPPIV_N=FE(4.6=100)
C2:
PF0093016=DPPIV_N=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGAGGCAACAACAGCTAT
R:
TGACCAACAGGTGACCAGGAT
Band lengths:
136-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]