HsaEX0020847 @ hg19
Exon Skipping
Gene
ENSG00000197635 | DPP4
Description
dipeptidyl-peptidase 4 [Source:HGNC Symbol;Acc:3009]
Coordinates
chr2:162895459-162902122:-
Coord C1 exon
chr2:162902042-162902122
Coord A exon
chr2:162895642-162895694
Coord C2 exon
chr2:162895459-162895531
Length
53 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGTTTTCTTTCATAGCAA
3' ss Score
9.65
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATGAGTTTGGACATTCTATCAATGATTATTCAATATCTCCTGATGGGCAGTTTATTCTCTTAGAATACAACTACGTGAAG
Seq A exon
CAATGGAGGCATTCCTACACAGCTTCATATGACATTTATGATTTAAATAAAAG
Seq C2 exon
GCAGCTGATTACAGAAGAGAGGATTCCAAACAACACACAGTGGGTCACATGGTCACCAGTGGGTCATAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197635_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(23.0=51.9)
A:
PF0093016=DPPIV_N=FE(27.9=100)
C2:
PF0093016=DPPIV_N=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGTTTGGACATTCTATCAATGA
R:
GACCATGTGACCCACTGTGTG
Band lengths:
135-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)