RnoEX6017051 @ rn6
Exon Skipping
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48340025-48345743:-
Coord C1 exon
chr3:48345663-48345743
Coord A exon
chr3:48340205-48340257
Coord C2 exon
chr3:48340025-48340097
Length
53 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGTTTTCTTTTGCAGCAA
3' ss Score
12.07
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGATCTTTGGAGATTCTATAAGTGATTATTCAGTGTCACCCGACAGACTGTTCGTTCTCTTAGAATACAATTATGTGAAG
Seq A exon
CAATGGAGACACTCCTACACGGCTTCATACAGTATTTATGACTTGAATAAAAG
Seq C2 exon
ACAGCTGATCACAGAAGAGAAGATTCCAAATAATACACAGTGGATCACATGGTCACAAGAAGGTCACAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(3.7=51.9)
A:
PF0093016=DPPIV_N=FE(4.5=100)
C2:
PF0093016=DPPIV_N=FE(6.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTATTCAGTGTCACCCGACA
R:
CAATTTGTGACCTTCTTGTGACCA
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]