MmuEX6101757 @ mm10
Exon Skipping
Gene
ENSMUSG00000064329 | Scn1a
Description
sodium channel, voltage-gated, type I, alpha [Source:MGI Symbol;Acc:MGI:98246]
Coordinates
chr2:66280696-66287776:-
Coord C1 exon
chr2:66287723-66287776
Coord A exon
chr2:66285911-66286048
Coord C2 exon
chr2:66280696-66280800
Length
138 bp
Sequences
Splice sites
3' ss Seq
CAAATTCCCTCCGTTGGCAGGTT
3' ss Score
7.76
5' ss Seq
AAGATAAGT
5' ss Score
2.82
Exon sequences
Seq C1 exon
GCCACATTTAAGGGCTGGATGGATATCATGTATGCTGCAGTTGATTCCAGAAAT
Seq A exon
GTTGAACTACAGCCTAAGTATGAGGAAAGCCTGTACATGTATTTGTACTTCGTCATCTTCATCATCTTCGGGTCCTTCTTTACCCTGAACCTGTTTATTGGTGTCATTATCGACAATTTCAACCAGCAAAAGAAGAAG
Seq C2 exon
TTTGGAGGTCAAGACATCTTTATGACAGAAGAACAGAAGAAATACTATAATGCAATGAAGAAATTAGGATCAAAAAAGCCACAAAAGCCTATCCCTCGACCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064329-'37-41,'37-40,38-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.4=100)
A:
PF0052026=Ion_trans=PD(15.3=76.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACATTTAAGGGCTGGATG
R:
CCAGGTCGAGGGATAGGCTTT
Band lengths:
158-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types