MmuEX6102093 @ mm10
Exon Skipping
Gene
ENSMUSG00000027010 | Slc25a12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:MGI Symbol;Acc:MGI:1926080]
Coordinates
chr2:71333605-71366580:-
Coord C1 exon
chr2:71366527-71366580
Coord A exon
chr2:71343890-71344032
Coord C2 exon
chr2:71333605-71333720
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTGCTTGTCTTTCAGTAT
3' ss Score
9.29
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTGCATACAACCAAACGAGGTGATCCTCATGAGCTGAGAAACATATTCCTCCAG
Seq A exon
TATGCCAGCACTGAGGTGGACGGGGAGCATTACATGACTCCAGAAGACTTCGTTCAACGCTATCTTGGCCTGTACAACGATCCAAACAGCAACCCAAAGATTGTGCAGCTCTTGGCAGGAGTAGCTGATCAAACCAAGGATGG
Seq C2 exon
GTTGATCTCCTATCAAGAGTTTTTGGCATTTGAATCTGTTCTATGTGCTCCAGATTCCATGTTCATAGTGGCTTTCCAACTGTTTGACAAGAGCGGAAATGGAGAGGTGACATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027010_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(14.5=55.6)
A:
PF134991=EF-hand_7=FE(68.1=100)
C2:
PF134991=EF-hand_7=PD(14.5=25.0),PF0003627=EF-hand_1=PU(65.5=47.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCATACAACCAAACGAGGTG
R:
CAAATGTCACCTCTCCATTTCCG
Band lengths:
170-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types