RnoEX0081765 @ rn6
Exon Skipping
Gene
ENSRNOG00000022922 | Slc25a12
Description
solute carrier family 25 member 12 [Source:RGD Symbol;Acc:1305181]
Coordinates
chr3:57946208-57997073:-
Coord C1 exon
chr3:57996973-57997073
Coord A exon
chr3:57957201-57957343
Coord C2 exon
chr3:57946208-57946323
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTACTTGTCTTTCAGTAT
3' ss Score
9.24
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TTTCTAGCTAAGCATTAACCAGTCATCCCCCCACCCCTACCCCATAGGTGCACACAACCAAACGAGGTGATCCTCATGAGCTGAGAAACATATTCCTACAG
Seq A exon
TATGCCAGCACCGAGGTGGACGGAGAGCATTACATGACTCCGGAAGACTTCGTTCAACGCTACCTTGGCCTGTACAATGATCCGAACAGCAACCCAAAGATCGTGCAGCTCTTGGCAGGAGTAGCTGATCAAACCAAGGATGG
Seq C2 exon
GTTGATCTCCTATCAAGAGTTTTTGGCATTTGAATCTGTTCTATGTGCTCCAGATTCCATGTTCATAGTGGCTTTCCAACTGTTTGACAAGAGTGGAAATGGAGAGGTGACATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022922-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF134991=EF-hand_7=PU(79.6=87.8)
C2:
PF134991=EF-hand_7=PD(18.5=25.0),PF0003627=EF-hand_1=PU(65.5=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTAAGCATTAACCAGTCATCCC
R:
AATGTCACCTCTCCATTTCCACT
Band lengths:
210-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]