DreEX6074069 @ danRer10
Exon Skipping
Gene
ENSDARG00000099353 | slc25a13
Description
solute carrier family 25 (aspartate/glutamate carrier), member 13 [Source:ZFIN;Acc:ZDB-GENE-080319-2]
Coordinates
chr19:41767767-41786749:-
Coord C1 exon
chr19:41786695-41786749
Coord A exon
chr19:41786047-41786189
Coord C2 exon
chr19:41767767-41767882
Length
143 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTTTTCCCTTCACAGTAT
3' ss Score
8.39
5' ss Seq
TGGGTTAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AAAGAAAACCTGAGGATTAATTTAAAAATGCACCGAGCACTGTATGGAACTCATA
Seq A exon
TATGCCAGTGTGGAGAAGAATGGAGAGCGCTACATGTCCCCAGAGGACTTTGTCTTCAAATTTCTCCATGCGCAAACAGACATTTGGCTTTCCAAGGATTCCGCCGTTCTACTGACAGGTGTTTTGGACCAAACCAAAGATGG
Seq C2 exon
GTTGATCTCCTTCCAGGAGTTTCTGGCTTTTGAGTCGGTGCTGTGCGCTCCGGATGCTCTCTTCATGGTCGCCTTCCAGCTCTTTGACAAAACTGGAAATGGCATTGCCACCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099353-'1-2,'1-1,2-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0003627=EF-hand_1=PU(42.1=16.7)
C2:
PF0003627=EF-hand_1=PD(52.6=25.0),PF0003627=EF-hand_1=PU(65.5=47.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGATTAATTTAAAAATGCACCG
R:
GCAATGCCATTTCCAGTTTTGT
Band lengths:
154-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]