BtaEX0032846 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016762 | SLC25A12
Description
Bos taurus solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (SLC25A12), mRNA. [Source:RefSeq mRNA;Acc:NM_001101194]
Coordinates
chr2:24679612-24715164:+
Coord C1 exon
chr2:24679612-24679659
Coord A exon
chr2:24699213-24699355
Coord C2 exon
chr2:24715049-24715164
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATGCATTATTTACTTTTTAGTAT
3' ss Score
5.8
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ACAACCAAGCGAGGTGATCCTCAGGAGTTAAGAAACATATTCCTACAG
Seq A exon
TATGCCAGTACTGAGGTTGATGGAGAACATTACATGACCCCGGAAGACTTTGTCCAGCGCTATCTTGGACTGTATAATGATCCAAATAGCAATCCGAAGATTGTGCAGCTCTTGGCAGGAGTAGCCGATCAAACCAAGGATGG
Seq C2 exon
GTTGATCTCCTATCAAGAGTTTTTGGCATTTGAATCTGTATTATGTGCTCCAGATTCCATGTTCATAGTGGCTTTCCAATTGTTTGACAAGAGTGGAAATGGAGAGGTGACATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016762_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(14.5=62.5)
A:
PF134991=EF-hand_7=FE(68.1=100)
C2:
PF134991=EF-hand_7=PD(14.5=25.0),PF0003627=EF-hand_1=PU(65.5=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCAAGCGAGGTGATCC
R:
AATGTCACCTCTCCATTTCCACT
Band lengths:
162-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development