GgaEX6042326 @ galGal3
Exon Skipping
Gene
ENSGALG00000009545 | F1P3D8_CHICK
Description
NA
Coordinates
chr7:19335328-19346488:+
Coord C1 exon
chr7:19335328-19335386
Coord A exon
chr7:19341556-19341698
Coord C2 exon
chr7:19346373-19346488
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTTATTTCTCTAGTAT
3' ss Score
8.25
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
AGCAGGTGCCTTCGACCAAAAGAGCAGATCCTGCCGAACTACGAAGTATCTTTTTGCAG
Seq A exon
TATGCCAGTGTTGAGAAAGATGGAGAGCATTACATGACCCCAGAAGATTTTGTGCAGAAATACCTAGGACTTTATACAGATCCACGTTACAATCCTAAAACAGTACAGCTGTTGGCTGGAGTGGCAGATCAAACTAAAGATGG
Seq C2 exon
GTTGATTTCCTTTCAAGAATTTTTGGCATTTGAATCTGTTTTGTGTACTCCAGATGCAATATTCATTGTTGCTTTTCAGTTATTTGACAAGAGTGGCAATGGAGAAGTAACATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545-'0-4,'0-0,2-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF138331=EF-hand_8=PU(78.4=83.3)
C2:
PF138331=EF-hand_8=PD(19.6=25.0),PF134991=EF-hand_7=PU(24.3=62.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGCCTTCGACCAAAAGA
R:
ATGTTACTTCTCCATTGCCACTCT
Band lengths:
170-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]