MmuEX6102247 @ mm10
Exon Skipping
Gene
ENSMUSG00000075270 | Pde11a
Description
phosphodiesterase 11A [Source:MGI Symbol;Acc:MGI:3036251]
Coordinates
chr2:76137339-76158428:-
Coord C1 exon
chr2:76158296-76158428
Coord A exon
chr2:76139835-76139910
Coord C2 exon
chr2:76137339-76137406
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTGTTCTTTCCTAGGCT
3' ss Score
11.27
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TTTCAAAGAGAGTGTGGAGAAATCGTCTTACTCTGACTGGCTGATAAACAACAGCATCGCTGAGCTGGTTGCTTCGACAGGCCTTCCTGTGAATGTCAGCGATGCCTACCAGGACCCACGCTTTGACGCTGAG
Seq A exon
GCTGACCAGATATCTGGTTTTCATATAAGATCTGTTCTCTGTGTCCCCATTTGGAACAGCAACCACCAAATAATTG
Seq C2 exon
GGGTGGCTCAAGTGTTGAACAGACTCGACGGAAAACCTTTTGATGATGCAGACCAAAGGCTTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075270-'6-9,'6-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(28.0=100)
A:
PF0159021=GAF=FE(15.9=100)
C2:
PF0159021=GAF=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCTTACTCTGACTGGCTGA
R:
AGCCTTTGGTCTGCATCATCA
Band lengths:
172-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types