GgaEX1042644 @ galGal3
Exon Skipping
Gene
ENSGALG00000009215 | PDE11A
Description
NA
Coordinates
chr7:16717044-16720125:+
Coord C1 exon
chr7:16717044-16717179
Coord A exon
chr7:16718534-16718609
Coord C2 exon
chr7:16720058-16720125
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTCTCATTTCTTCATTTTAGGCT
3' ss Score
10.99
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TTTCAAAGAAGGTGTGGAGAAATCACCATCTTACTCTGACTGGCTAATAAATAACAGCATTGCTGAACTTGTAGCTTCCACGGGTCTCCCAGTGAATATTAGTGATGCCTATCAGGATCCTCGCTTTGATGCTGAA
Seq A exon
GCTGACCAGATCTTTGGCTTTCACATAAGGTCTGTTCTCTGTGTTCCTATATGGAATAGCAGCCACCAAATAATAG
Seq C2 exon
GGGTAGCTCAAGTGTTGAACAGACTTGATGGGAAGCCTTTTGATGATGCTGACCAGCGATTGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009215-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(28.5=100)
A:
PF0159021=GAF=FE(15.8=100)
C2:
PF0159021=GAF=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCATCTTACTCTGACTGGCT
R:
TGGTCAGCATCATCAAAAGGCT
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]