BtaEX6008911 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016396 | PDE11A
Description
Bos taurus phosphodiesterase 11A (PDE11A), mRNA. [Source:RefSeq mRNA;Acc:NM_001205422]
Coordinates
chr2:19045819-19065537:+
Coord C1 exon
chr2:19045819-19045951
Coord A exon
chr2:19060381-19060456
Coord C2 exon
chr2:19065470-19065537
Length
76 bp
Sequences
Splice sites
3' ss Seq
ATTGCTTTCTTATGTCCTAGGCT
3' ss Score
9.41
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TTTCAAAGAAAGCATGGAGAAATCATCGTACTCTGATTGGCTGATAAATAACAGTGTTGCCGAGCTGGTGGCTTCCACGGGCCTTCCAGTGAACATCAGTGATGCCTACCAGGATCCCCGCTTTGATGCCGAG
Seq A exon
GCTGACCAGATATCTGGTTTTCACATAAGATCAGTTCTCTGCGTACCTATTTGGAATAGCAACCACCAAATAATTG
Seq C2 exon
GAGTGGCTCAAGTGTTAAATAGACTCGATGGGAAACCTTTCGATGATGCCGATCAACGACTTTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016396-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(28.0=100)
A:
PF0159021=GAF=FE(15.9=100)
C2:
PF0159021=GAF=FE(14.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGTACTCTGATTGGCTGA
R:
TTGATCGGCATCATCGAAAGGT
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]