RnoEX6017479 @ rn6
Exon Skipping
Gene
ENSRNOG00000024457 | Pde11a
Description
phosphodiesterase 11A [Source:RGD Symbol;Acc:621793]
Coordinates
chr3:62968845-63010229:-
Coord C1 exon
chr3:63010097-63010229
Coord A exon
chr3:62984334-62984409
Coord C2 exon
chr3:62968845-62968912
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTCTTCTGTCCTAGGCT
3' ss Score
10.67
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TTTCAAAGAAAGTGTGGAGAAGTCATCTTACTCCGACTGGCTGATAAATAACAGTATCGCTGAGCTGGTTGCTTCGACAGGCCTTCCTGTGAATGTCAGCGATGCCTACCAGGACCCACGCTTTGACGCTGAG
Seq A exon
GCTGACCAGATATCTGGCTTTCATATAAGATCTGTTCTCTGTGTCCCTATTTGGAACAGCAACCACCAAATAATAG
Seq C2 exon
GGGTCGCTCAAGTGCTGAACAGACTCGATGGGAAACCTTTTGATGATGCTGACCAAAGGCTTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024457-'18-17,'18-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(28.0=100)
A:
PF0159021=GAF=FE(15.9=100)
C2:
PF0159021=GAF=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCATCTTACTCCGACTGGCT
R:
AGCCTTTGGTCAGCATCATCA
Band lengths:
174-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]