DreEX0054255 @ danRer10
Exon Skipping
Gene
ENSDARG00000063732 | pde11a
Description
phosphodiesterase 11a [Source:ZFIN;Acc:ZDB-GENE-070912-207]
Coordinates
chr9:1534150-1539837:+
Coord C1 exon
chr9:1534150-1534282
Coord A exon
chr9:1536096-1536171
Coord C2 exon
chr9:1539770-1539837
Length
76 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTCCAATCTCTTCAGGCA
3' ss Score
8.94
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CTTTAAGGACAGCATGGATAAATCCTCATACTCTGATTGGCTGATCAATAACAGCATTGCAGAGCTGGTGGCCTCCACTGGACTTCCTGTGAACATCAGCGACGCCTATCAAGACCCTCGATTCGACGCTGAG
Seq A exon
GCAGATCAGTTCTCCGGCTTCCACATCAGATCTGTGCTGTGTGTCCCCATCTGGAACAGTAACCACCAAATCATCG
Seq C2 exon
GTGTGGCTCAGGTCTTGAACAGACTCGACGGGAAACCATTTGATGATGCAGATCAGAGGCTGTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063732-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(30.3=100)
A:
PF0159021=GAF=FE(17.2=100)
C2:
PF0159021=GAF=FE(15.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCATACTCTGATTGGCTGA
R:
CTCGAACAGCCTCTGATCTGC
Band lengths:
179-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]