MmuEX6106949 @ mm9
Exon Skipping
Gene
ENSMUSG00000017737 | Mmp9
Description
matrix metallopeptidase 9 [Source:MGI Symbol;Acc:MGI:97011]
Coordinates
chr2:164775209-164775974:+
Coord C1 exon
chr2:164775209-164775337
Coord A exon
chr2:164775447-164775620
Coord C2 exon
chr2:164775801-164775974
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTCTAGCCTCCTTTCTACAGTGA
3' ss Score
5.42
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
AGCACGGAGACGGGTATCCCTTCGACGGCAAGGACGGCCTTCTGGCACACGCCTTTCCCCCTGGCGCCGGCGTTCAGGGAGATGCCCATTTCGACGACGACGAGTTGTGGTCGCTGGGCAAAGGCGTCG
Seq A exon
TGATCCCCACTTACTATGGAAACTCAAATGGTGCCCCATGTCACTTTCCCTTCACCTTCGAGGGACGCTCCTATTCGGCCTGCACCACAGACGGCCGCAACGACGGCACGCCTTGGTGTAGCACAACAGCTGACTACGATAAGGACGGCAAATTTGGTTTCTGCCCTAGTGAGA
Seq C2 exon
GACTCTACACGGAGCACGGCAACGGAGAAGGCAAACCCTGTGTGTTCCCGTTCATCTTTGAGGGCCGCTCCTACTCTGCCTGCACCACTAAAGGCCGCTCGGATGGTTACCGCTGGTGCGCCACCACAGCCAACTATGACCAGGATAAACTGTATGGCTTCTGCCCTACCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017737-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(13.0=100)
A:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCCTTCGACGGCAAGGAC
R:
GGTCATAGTTGGCTGTGGTGG
Band lengths:
256-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: