GgaEX6023411 @ galGal3
Exon Skipping
Gene
ENSGALG00000006992 | MMP9
Description
NA
Coordinates
chr20:10530430-10531066:+
Coord C1 exon
chr20:10530430-10530558
Coord A exon
chr20:10530647-10530820
Coord C2 exon
chr20:10530893-10531066
Length
174 bp
Sequences
Splice sites
3' ss Seq
AGTGCCTCCTCTCCTTGCAGAGG
3' ss Score
10.82
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
AGCATGGTGATGGGTACCCCTTCGACGGCAAGGATGGGCTCCTGGCCCACGCCTTTCCCCCCGGCAGTGGGATTCAGGGCGATGCCCACTTTGATGATGATGAGTTCTGGACTCTGGGAACCGGCTTAG
Seq A exon
AGGTGAAGACCCGCTATGGGAATGCCAACGGGGCCAGCTGCCACTTCCCCTTCATCTTTGAGGGCCGCTCCTACTCCCGGTGCATCACGGAGGGCCGCACGGATGGGATGCTGTGGTGTGCCACCACCGCCAGCTACGATGCCGACAAGACCTACGGCTTCTGCCCCAGCGAGC
Seq C2 exon
TGCTCTACACCAATGGTGGCAACAGCGATGGGTCTCCCTGCGTCTTCCCCTTCATCTTCGATGGCGCCTCCTATGACACCTGCACCACAGATGGGCGCTCTGACGGCTATCGCTGGTGTGCCACCACGGCCAACTTCGACCAGGACAAGAAATACGGCTTCTGCCCCAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006992-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(13.1=100)
A:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGACGGCAAGGATGGG
R:
TTGTCCTGGTCGAAGTTGGC
Band lengths:
258-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]