BtaEX6066941 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020676 | MMP9
Description
Bos taurus matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) (MMP9), mRNA. [Source:RefSeq mRNA;Acc:NM_174744]
Coordinates
chr13:75468203-75468975:+
Coord C1 exon
chr13:75468203-75468331
Coord A exon
chr13:75468420-75468593
Coord C2 exon
chr13:75468802-75468975
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCAGTCCCCCTTTCCCGCAGTGA
3' ss Score
8.71
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
AGCACGGAGATGGGTATCCCTTCGATGGGAAGAACGGGCTCCTGGCACACGCCTTTCCGCCTGGCAAAGGCATTCAGGGAGATGCCCACTTCGACGATGAAGAGTTGTGGTCTCTGGGCAAAGGCGTTG
Seq A exon
TGATCCCGACCTACTTCGGAAACGCGAAGGGCGCCGCCTGCCACTTCCCCTTCACCTTTGAGGGTCGCTCCTACTCCGCCTGCACCACGGACGGCCGTTCCGACGACATGCTCTGGTGCAGCACCACCGCCGACTACGACGCCGACCGCCAGTTCGGCTTCTGCCCCAGCGAGA
Seq C2 exon
GACTCTACACCCAGGACGGCAATGCGGACGGCAAGCCCTGCGTCTTCCCGTTCACCTTCCAGGGCCGCACCTACTCCGCCTGTACCTCCGATGGTCGCTCCGACGGCTACCGCTGGTGCGCCACCACCGCCAACTACGACCAGGACAAGCTCTACGGCTTCTGCCCGACCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020676-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(13.0=100)
A:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGATGGGAAGAACGGGCTC
R:
CTTGTCCTGGTCGTAGTTGGC
Band lengths:
258-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]