RnoEX6020271 @ rn6
Exon Skipping
Gene
ENSRNOG00000017539 | Mmp9
Description
matrix metallopeptidase 9 [Source:RGD Symbol;Acc:621320]
Coordinates
chr3:161415003-161415762:+
Coord C1 exon
chr3:161415003-161415131
Coord A exon
chr3:161415241-161415414
Coord C2 exon
chr3:161415589-161415762
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTCTAGCCTCCTTTCTACAGTGG
3' ss Score
5.26
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
AGCACGGGGACGGGTATCCCTTCGACGGCAAGGATGGTCTACTGGCACACGCCTTTCCCCCTGGCCCCGGCATTCAGGGAGATGCCCACTTCGACGACGACGAGTTGTGGTCGCTGGGCAAAGGCGCCG
Seq A exon
TGGTCCCCACTTACTTTGGAAACGCAAATGGTGCCCCATGTCACTTTCCCTTCACCTTCGAGGGACGCTCCTATTTGTCCTGCACCACGGATGGCCGCAACGACGGCAAGCCTTGGTGTGGCACGACAGCTGACTACGACACAGACAGAAAATATGGTTTCTGCCCCAGTGAGA
Seq C2 exon
ATCTCTACACGGAGCATGGCAACGGAGACGGCAAACCCTGCGTATTTCCATTCATCTTCGAGGGCCACTCCTACTCTGCCTGCACCACTAAAGGTCGCTCGGATGGTTATCGCTGGTGCGCCACCACCGCCAACTATGACCAGGATAAGCTGTATGGCTTCTGTCCTACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017539-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(13.0=100)
A:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGATGGTCTACTGGCAC
R:
ATCCTGGTCATAGTTGGCGGT
Band lengths:
248-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]