MmuEX7000980 @ mm10
Exon Skipping
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:69954276-69959663:+
Coord C1 exon
chr2:69954276-69954361
Coord A exon
chr2:69955965-69956106
Coord C2 exon
chr2:69959567-69959663
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGACACATACATTATATC
3' ss Score
-6.34
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGATGTCTGACGATGACATTCTCAGGGCAGAGATGGTGGCCCAGCTGTGTATGAACGACAGGACACATAGCTCTTTGCTTGACCTC
Seq A exon
ATCCCAGAAAATCCCAACCCCAAAAGTGGCATTATTCCTGGAAGTTATAGCTTTGAATCAGTTTTATCTGCTGTAGCGGACTTTAGGGCTCCCATTTTTGAACCTGGAGGCTCTATGCAACAAGGCATGTACACTCCCAAAG
Seq C2 exon
CTGAAGTCTGGGATCAGGAGTTTGATCCTGTCATGGTCATTCTTCGAACCGTTTACCGCCGAGACGTGCAGTCTGCAATGGACAGATACACAGCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308-'29-31,'29-28,33-31=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGACGATGACATTCTCAGG
R:
TGCTGTGTATCTGTCCATTGCA
Band lengths:
178-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types