RnoEX6017327 @ rn6
Exon Skipping
Gene
ENSRNOG00000008616 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
Coordinates
chr3:56194503-56199762:+
Coord C1 exon
chr3:56194503-56194590
Coord A exon
chr3:56196298-56196437
Coord C2 exon
chr3:56199666-56199762
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTTGACACATACATCATATCCC
3' ss Score
-5.77
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGATGTCTGATGATGAGATTCTCAGGGCAGAGATGGTAGCCCAGCTGTGTATGAATGACAGGACGCATAGCTCTTTGCTTGACCTCAT
Seq A exon
CCCAGAAAATCCCAACCCTAAAAGTGGCATTATTCCTGGAAGCTATAGCTTTGAATCAGTTTTATCTGCTGTAGCTGACTTTAAGGCTCCCGTTTTTGAACCTGGAGGCTCCATGCAACAAGGCATGTATACTCCCAAAG
Seq C2 exon
CTGAAGTCTGGGATCAGGAGTTTGATCCTGTCATGGTCATTCTTCGAACAGTTTATCGCCGAGATGTGCAGTCTGCCATGGACAGATACACAGCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008616-'29-31,'29-29,32-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.003 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATGATGAGATTCTCAGGGCA
R:
TGCTGTGTATCTGTCCATGGC
Band lengths:
178-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]