MmuEX7003080 @ mm10
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137428382-137434191:-
Coord C1 exon
chr5:137433893-137434191
Coord A exon
chr5:137429015-137429232
Coord C2 exon
chr5:137428382-137428523
Length
218 bp
Sequences
Splice sites
3' ss Seq
AGTGTCCCTCTGATCCATAGCTC
3' ss Score
6.27
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
TTGCCAGAAAATCGAAGGGCAGAACCTCCAAGTGGAACAGCAGGAGATCATGAATGGAAAATGCAGGCCCATTGACTTTGAGAAAGCCCAGGCAAACTGCCAAACTGCCCTTCAGGGTCCTGCCTGGGCCCATTGTTCCTCCCGGGTACCCATCAAGCCCTTCTTGCTGAAGTGTATGAACAGCTTCTGTGAATTCAGAGAGCTCTTCCGTGCTCTTTGTGATTCTCTGCAGTCCTTTGAAGATGCCTGCCAGAACCAGGGGCTCAAGCCACCTATCTGGAGGAACAGCAGCTTCTGCC
Seq A exon
CTCTGGAGTGTCCAGCTCACAGTCACTATACAAACTGCCTTCCCTCCTGTCCACCTTCCTGCTTGGATCCAGACAGCCGCTGTGAGGGCTCTGGCCACAAAGTCCCCGCCACCTGCAGGGAGGGCTGCATCTGCCAACCTGACTATGTGCTGCTTAACGACAAGTGTGTGCTCAGATCTCATTGTGGCTGCAAAGATGCTCAGGGTGTCTTCATCCCG
Seq C2 exon
GCAGGCAAGACTTGGATATCCGAAGACTGTACCCAGAGCTGTACCTGCATGAAAGGAAGCATGAGGTGCTGGGATTTCCAGTGTCCCCCAGGGACATACTGCAAGAACAGCAATGATGGCAGCAGTAACTGTGTCAAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'41-41,'41-40,42-41=AN
Average complexity
A_C1
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=74.3)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.8),PF127142=TILa=PU(17.9=13.7)
C2:
PF127142=TILa=PD(78.6=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAATGCAGGCCCATTGA
R:
ATGCAGGTACAGCTCTGGGTA
Band lengths:
295-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types