MmuEX7004210 @ mm10
Exon Skipping
Gene
ENSMUSG00000054746 | Abca15
Description
ATP-binding cassette, sub-family A (ABC1), member 15 [Source:MGI Symbol;Acc:MGI:2388709]
Coordinates
chr7:120337167-120340657:+
Coord C1 exon
chr7:120337167-120337317
Coord A exon
chr7:120339989-120340248
Coord C2 exon
chr7:120340541-120340657
Length
260 bp
Sequences
Splice sites
3' ss Seq
ATCTTCATTTTCTCCTTTAGGGT
3' ss Score
12.28
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GTAAAATACTACCTGAGATTTAGTGATATTAAGAAGAACATAAATTCTGGGGCATATTATCAAGGGGACACCTGGCTTACAAAATTTCTCTTTCATTCTTTGCGTCTTGTGGGACCCAGAAACCCATATGAAGCAGACGGAGGCAGTCCTG
Seq A exon
GGTACATCACGGAAGGGTTCCTGGCTGTGCAACATGCCCTAGACAAGGCCATCATGCTACATCATGGTGGAGCTGATGCAGCAGCACTCTTCAATGACATTAGTCTTTTCATTCAGAGATTTCCATACCCTGCATATTATCATGATTACTTCTATTTATTTGCTACTACTTTCATCCCTCTAACAGTGGCCTGCACCTTCTTTTTTAATCATTATGTCCTAGTTTGGTCCATTGTGTGGGAAAAGGAAAACCGATTAAAG
Seq C2 exon
GAATACCAGCTCATGATAGGACTGAGAAACTGGATGTTCTGGGTTGCCTATTTCTTCACCTTCCTCTGTCTGTATTTTATTAACATTATAGTTATGTGCATGGTTTTATTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054746-'4-14,'4-6,7-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.3=100)
A:
PF126982=ABC2_membrane_3=FE(19.5=100)
C2:
PF126982=ABC2_membrane_3=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTACCCTCTTAGAGTGTG
R:
CTTGGAGCCCCCTATCAGG
Band lengths:
256-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types