RnoEX6004678 @ rn6
Exon Skipping
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190081796-190094970:+
Coord C1 exon
chr1:190081796-190081946
Coord A exon
chr1:190094259-190094518
Coord C2 exon
chr1:190094854-190094970
Length
260 bp
Sequences
Splice sites
3' ss Seq
ATCTTTATTTTCTCCTTTAGGGT
3' ss Score
12.3
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
ATAAAATACAATCTGCGATTTAGTGATATTAAAAAGAACATACATGGTATGGCATATTATCAAGGGCACACCTGGCTTACAAAATTTCTCTTTCCACCTTTGCGTATTGTGGGACCCAGAAATCCACAGGAAGCAGATGGAGGCAGTCCTG
Seq A exon
GGTACATTACTGAAGGATTCCTGGCTGTGCAACATGCCCTAGACAAGGCCATCATGCTCCACCATGGTGGAGCTGCTGCAACGGCACTCTTCAATGATGTTAGCCTTTTCATTCAGAGATTTCCATACCCTGCATATTATCATGATCACTTCTATTTGTTTGCTAATACTTTTGTCCCTCTAACAGTGGCAAGTATCTTCTTTTTGAATCATCTTATCTTAGTTTGGTCCATTGTGTGGGAAAAGGAAAACCGATTAAAG
Seq C2 exon
GAATACCAGCTCATGATAGGACTGAGAAACTGGATGTTCTGGATTGCCTATTTCTTCACCTTCTTCTGTTTGTATTTTATTAACATTATATTTATGTGCATTGTTTTATTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.3=100)
A:
PF126982=ABC2_membrane_3=FE(19.5=100)
C2:
PF126982=ABC2_membrane_3=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGAACATACATGGTATGGCA
R:
AATACAAACAGAAGAAGGTGAAGAAA
Band lengths:
197-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]