MmuEX7004213 @ mm10
Exon Skipping
Gene
ENSMUSG00000109113 | Gm32916
Description
predicted gene, 32916 [Source:MGI Symbol;Acc:MGI:5592075]
Coordinates
chr7:120612520-120620192:+
Coord C1 exon
chr7:120612520-120612632
Coord A exon
chr7:120615616-120615745
Coord C2 exon
chr7:120620001-120620192
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATGACTGTATACTTTTGCAGAAT
3' ss Score
8.05
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ACTAGAGTCAAAGAGGAACGGATAAAGAAACTAAACAAAATCACACACTCTCTGAAGTGTTCTCTGGATCAAATGAAGAATAAAAATGAAGAATTAGAGAGGGAGCTCACTGA
Seq A exon
AATAAAGAAACACTTAGGAGTAATGAGAAAGAAATTGAATGACCATGAAAATGGAGAATTTAGTTGTCATGGAAATTTTAAAACTAAAGAACAAGAAGTGAATGTTTCAGTGGATATGTTTAAAAATGAG
Seq C2 exon
ATCCATGAATTGAAAGAAAAATGGGGAACTATATCCTCCAAATATCTACCTCTGAATATGCAATTTAAATACATTGAGCAGGAGTTGTTATCCATAAAAATAGCACAAAAGCAATACGAGAAGCTGCGTGAAGATCAGAGGAGTCTGCGAAGGGAGGCACTAGGCCTGCAGTGCCAGCTGCGAGAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109113-'1-16,'1-10,11-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGAGTCAAAGAGGAACGGA
R:
CTCCTCTGATCTTCACGCAGC
Band lengths:
256-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types