GgaEX6000884 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:26129777-26131446:+
Coord C1 exon
chr1:26129777-26129889
Coord A exon
chr1:26130305-26130446
Coord C2 exon
chr1:26131165-26131446
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTGACTGATTTGTTGTGCAGGTG
3' ss Score
7.8
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TGTGAGAGTGAAAGAAAGAAAGTGAAGAAGCTGGTAGAGTTGAAACGACCAGTTGAAGCACGTCTTGACCAGGAAATGAAAAGAAATATTGAACTGCAGAAAGAATGTCACAG
Seq A exon
GTGCAAGAGGCTTCTGAACAGAGCTGTGAAGAAACTAAGGATGTATGAGGCCAGAGAAAGAGAGTCCCAATTTAATTTCCAGGGAGAAATGAAGAACAGGTATTCTGAAATGGTGAATGAAGTTGGCAAATTAAGAACAAAG
Seq C2 exon
GTTACTGAACTTTCTCAGCAGCTGGAGTTAGAGTCTAAAAAATGCATCCAGCTGGAAGCACAAAACCAGGATTTGCGAGAAGAGCTGTCTGCTCTGCGTGAGAACCATGAAAAACTGGAGAAGAGCAAGTGCCAGCTGAAGGAAGAGGTGGCAAACCTCAGACATCATTTGGAGGCTAATATGGTGAACCACAGCCAAATAGAACAGTACAAGAAAGAGATGGAAGAACGAGCAGGACAAGAAATCAGACAAAAACTACAAGAAGTCAATTTGTTTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'26-22,'26-19,27-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.146 C2=0.372
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120013=DUF3496=PU(25.6=16.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGACCAGTTGAAGCACGT
R:
GCCTCCAAATGATGTCTGAGGT
Band lengths:
247-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]