MmuEX0005069 @ mm9
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118458508-118465911:-
Coord C1 exon
chr6:118465799-118465911
Coord A exon
chr6:118461584-118461713
Coord C2 exon
chr6:118458508-118458798
Length
130 bp
Sequences
Splice sites
3' ss Seq
TATTCTGTTCATTTTTGCAGATT
3' ss Score
10.02
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TCTGAAGAGGATAAGGAAAAACTGCAGAAACTTACCGAGTTGAAGGAGTCTCTGGAATGTACTGTGGATCAAGAACAGAAGAGAAGCAGTGCGTTAGAAAAAGAACTGGCAGA
Seq A exon
ATTTAAGGAAGTCTTAAAAATGACCAAAAAAGAATTAAATGAATATGAAAACAGAGAACTTAATCTTCGTCAAGATATAAAAAACAATCACCTTGAAATGGATATCCCAGTTAGTACACTAATAAAAAAG
Seq C2 exon
ATTGATGATCTTACAGCAAAACTGGAAACTGCATCTTCAAAATGTCTACATCTGGGTAAAAAAAATCAGCTGCTTCAGCAGGAGTTACTATTGATGAGGACTATACAAAAGAAGTGTGGGAAACTAGAGAAGAATAAAAAGCAATTGGAGCAGGAGGTCGTGAACCTCAGAAGTCACATGGAGAAGAACATGGTGGAGCACAGCCAAGCACAGCAGTACGCGCGGGAGGTCGAAGAGCGAGCGAGGCAGGACTTGGTGGAAAAGTTAAAACAGGTCAACCTCTTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=0.182 C2=0.270
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGAGAAGCAGTGCGTT
R:
GCTGTGCTCCACCATGTTCTT
Band lengths:
243-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: