BtaEX0003522 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17913175-17919606:-
Coord C1 exon
chr13:17919494-17919606
Coord A exon
chr13:17917813-17917942
Coord C2 exon
chr13:17913175-17913469
Length
130 bp
Sequences
Splice sites
3' ss Seq
CATTCTATACATTTCTACAGATT
3' ss Score
7.62
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TCTGAGGATGAAAAGGAACAATTAAAGAAATACATTGAATTAAAACAATCTCTGGAAAATAGCTTGGACCAAGAAAAGAAGAAAAACAGTGAGTTAGAAAAAGAGATTACTGG
Seq A exon
ATTTAAGAAACTCTTAAAAATGACAAGAAGGAAGTTAAATGAATATGAAAATGGAGAGCTTAGTTTCCATGGAGATTTAAAAACCAGTCAAACTGAAATGGATATTCAAATTAATAAGCTAAAACATAAG
Seq C2 exon
ATTGAGGATCTTACAGCAGAGCTGGAAGCTGCATCTTCAAAATGTCTGCACCTGGATGCAAAAAATCAAGTTCTTCGAGAGGAGTTATTATCTATGAAAGGAATGCAAAAGAAATGTGAAAAACTAGAGGAGAAGAAAAAGAAGTTGGAGCAAGAAGTAGTGCACCTCAGAAGTCATATAGAAATGAATATGATCGAACACAGTCAAGTAGAGCAGTATAAACGGGAAATTGAAGAAAGGGCGAGACAGGATCTCGTAGAGAAATTAAAGGAAGTCAACCTATGTTTGCAGGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=0.205 C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGGAAAATAGCTTGGACCA
R:
ATGACTTCTGAGGTGCACTACT
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development