RnoEX0009604 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150552873-150560631:-
Coord C1 exon
chr4:150560519-150560631
Coord A exon
chr4:150557492-150557621
Coord C2 exon
chr4:150552873-150553163
Length
130 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTGCATTTTTTATAGATT
3' ss Score
8.69
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TCTGAAGAGGATCAGGAAAAACTGAAGAAGCTTACGGAGTTGAAAGAGTCCCTGGAATATACTTTGGATCAAGAACAGAAGAGAAGCGACGCATTAGAAAAGGAACTGACAGA
Seq A exon
ATTTAAGGAAGTCTTAAAAATGACCAAAAAAGAATTAAGTGAATATGAAAACAGAGAACTTCATCTTCATCAAGATATGAAAAGCAGTCAACTTGAAATGGATGTCCCAGTTAATGCACTAGTAAAAAAG
Seq C2 exon
ATTGATGATCTTACAGAAAAACTGGAGACTGCATCTTCAAAATGTCTACATCTGGGTAAAAGAAATCAGCTGCTTCAGCAAGAATTACTGCTGATGAAAACTCTACAGAAGAAGTGTGGGAAACTCGAGAAGAGTAAAAGGAAACTGGAGCAGGAGGTGGCGAGCCTCAGGAGCCACATAGAGGAGAACATGGTGGAGCACAGCCGAGTGCAGCAGTACGCGAGGGAGGTCGAGGATCGAGCGAGGCAGGACTTGGTGGAAAAGTTAAAACAGGTCAACCTCTTCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'41-41,'41-38,42-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.386 C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGAAGAGAAGCGACGCA
R:
CTGTGCTCCACCATGTTCTCC
Band lengths:
244-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]