DreEX0000449 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3458214-3461077:-
Coord C1 exon
chr25:3460965-3461077
Coord A exon
chr25:3459015-3459156
Coord C2 exon
chr25:3458214-3458314
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGTCAGGTT
3' ss Score
10.54
5' ss Seq
AGGGTACAA
5' ss Score
1.91
Exon sequences
Seq C1 exon
ATGGAGCTCGAGAAGAAAAAGGCCAAGAAGCTGTCGGAGCAGAAGAAGTCTGTGGACACTCGTCTGGAGCAGGAGATGCAGAGAAACACAGACCTCCAGAAAGAAATGTACAG
Seq A exon
GTTGAAGACCCTGCTGAAGACCGCTAAGAAGCAGTTGCGTGATGGGGGCGGTGGAGCTCTGGACTCTCCTCAGGGCAGCTTCAGAGCGGATGTGAGCCATCGTCTGGAGGCCGAGAGCTCCGTCAGCAGAATGAAGAGCAGG
Seq C2 exon
TCATGGATCAGAGTCAGGCTGAGCAGTACCGCAGGGACACCGAGGAGAGAGCCCGACAGGAGATCCGACACAAGCTGGAGGAGGTCAACCTGTTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768_MULTIEX3-9/9=8-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.938 C2=0.783
Domain overlap (PFAM):
C1:
PF150351=Rootletin=FE(27.4=100)
A:
PF150351=Rootletin=PD(11.1=31.2),PF150351=Rootletin=PU(22.1=52.1)
C2:
PF150351=Rootletin=PD(77.0=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCGAGAAGAAAAAGGCCA
R:
CTGCAGGAACAGGTTGACCTC
Band lengths:
210-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]