GgaEX6000884 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24103312-24104981:+
Coord C1 exon
chr1:24103312-24103424
Coord A exon
chr1:24103840-24103981
Coord C2 exon
chr1:24104700-24104981
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTGACTGATTTGTTGTGCAGGTG
3' ss Score
7.8
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TGTGAGAGTGAAAGAAAGAAAGTGAAGAAGCTGGTAGAGTTGAAACGACCAGTTGAAGCACGTCTTGACCAGGAAATGAAAAGAAATATTGAACTGCAGAAAGAATGTCACAG
Seq A exon
GTGCAAGAGGCTTCTGAACAGAGCTGTGAAGAAACTAAGGATGTATGAGGCCAGAGAAAGAGAGTCCCAATTTAATTTCCAGGGAGAAATGAAGAACAGGTATTCTGAAATGGTGAATGAAGTTGGCAAATTAAGAACAAAG
Seq C2 exon
GTTACTGAACTTTCTCAGCAGCTGGAGTTAGAGTCTAAAAAATGCATCCAGCTGGAAGCACAAAACCAGGATTTGCGAGAAGAGCTGTCTGCTCTGCGTGAGAACCATGAAAAACTGGAGAAGAGCAAGTGCCAGCTGAAGGAAGAGGTGGCAAACCTCAGACATCATTTGGAGGCTAATATGGTGAACCACAGCCAAATAGAACAGTACAAGAAAGAGATGGAAGAACGAGCAGGACAAGAAATCAGACAAAAACTACAAGAAGTCAATTTGTTTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'38-40,'38-37,39-40=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGACCAGTTGAAGCACGT
R:
GCCTCCAAATGATGTCTGAGGT
Band lengths:
247-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]