MmuEX7004260 @ mm10
Exon Skipping
Gene
ENSMUSG00000030683 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:MGI Symbol;Acc:MGI:2385295]
Coordinates
chr7:126962353-126963757:+
Coord C1 exon
chr7:126962353-126962491
Coord A exon
chr7:126963265-126963461
Coord C2 exon
chr7:126963563-126963757
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCTGATTCCCCTCACTGCAGCTT
3' ss Score
7.99
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
CCATGTGTGGAGGAGAGCTGTCTGAGCCAGCTGGTGTGGTACTCTCTCCCGACTGGCCCCAGAGTTACAGCCCTGGCCAAGACTGCGTGTGGGGCCTGCACGTCCAGGAAGAGAAGCGCATCTTGCTCCAAGTTGAAAT
Seq A exon
CTTGAATGTTCGCGAAGGGGATATGCTAACACTGTTCGACGGGGACGGTCCGAGCGCTCGAGTCCTGGCCCAGCTGCGAGGACCTCAGCCGCGCCGCCGCCTCCTCTCCTCTGGACCTGATCTCACTCTGCAGTTTCAGGCACCCCCTGGTCCCCCAAATCCGGGCCTAGGCCAGGGTTTCGTGTTACATTTCAAAG
Seq C2 exon
AGGTCCCGAGAAACGATACGTGCCCGGAGCTACCACCACCTGAGTGGGGCTGGAGGACAGCATCCCACGGGGACCTTATCCGGGGTACAGTGCTCACCTATCAATGCGAGCCTGGCTATGAACTACTGGGATCAGACATCCTCACTTGCCAATGGGACCTGTCCTGGAGCGCGGCGCCACCTGCCTGCCAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030683-'10-23,'10-21,15-23=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.507 C2=0.121
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(40.4=93.6)
A:
PF0043115=CUB=PD(58.7=95.5)
C2:
PF0008415=Sushi=WD(100=84.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGGAGAGCTGTCTGAG
R:
TTCATAGCCAGGCTCGCATTG
Band lengths:
256-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types