RnoEX0079971 @ rn6
Exon Skipping
Gene
ENSRNOG00000027098 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:RGD Symbol;Acc:1565281]
Coordinates
chr1:198395409-198396788:+
Coord C1 exon
chr1:198395409-198395547
Coord A exon
chr1:198396296-198396492
Coord C2 exon
chr1:198396594-198396788
Length
197 bp
Sequences
Splice sites
3' ss Seq
GTCTGATACCCCTCATGTAGCTT
3' ss Score
4.13
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
CCATGTGTGGAGGAGAGCTGTCTGAGCCAGCTGGTGTGGTACTCTCTCCCGACTGGCCCCAGAGTTACAGTCCTGGCCAAGACTGCGTGTGGGGCCTGCACGTCCAGGAAGAGAAGCGCATCTTGCTCCAAGTTGAAAT
Seq A exon
CTTGAATGTTCGCGAAGGGGATATGCTAACACTGTTCGACGGTGATGGCCCGAGCGCTCGAGTCCTGGCCCAGCTGCGGGGGCCTCAGCCACGCCGCCGCCTCCTCTCCTCTGGACCTGATCTCACTCTGCAGTTTCAGGCACCCCCTGGGCCTCCAAATCCGGGCCTAGGCCAGGGTTTCGTGTTACACTTCAAAG
Seq C2 exon
AGGTCCCGCGGAACGATACGTGCCCGGAACTGCCACCTCCTGAGTGGGGCTGGAGGACAGCATCCCACGGGGACCTTATCCGGGGCACCGTGCTCACTTACCAATGCGAGCCTGGCTACGAACTACTGGGATCAGACATCCTCACTTGCCAATGGGACCTGTCCTGGAGCGCGGCGCCACCTGCCTGCCAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027098-'16-25,'16-22,17-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.507 C2=0.121
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(40.4=93.6)
A:
PF0043115=CUB=PD(58.7=95.5)
C2:
PF0008415=Sushi=WD(100=84.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGTGTGGTACTCTCTCC
R:
TCCCAGTAGTTCGTAGCCAGG
Band lengths:
242-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]