DreEX6015599 @ danRer10
Exon Skipping
Gene
ENSDARG00000076052 | sez6l2
Description
seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
Coordinates
chr3:15097067-15100834:-
Coord C1 exon
chr3:15100696-15100834
Coord A exon
chr3:15099640-15099836
Coord C2 exon
chr3:15097067-15097261
Length
197 bp
Sequences
Splice sites
3' ss Seq
TATATTTTGCTTACTTGCAGTTT
3' ss Score
8.37
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
Exon sequences
Seq C1 exon
CTCTGTGTGGCGGTGAGCTCACAGATCCAGTGGGAACAGTGTTGTCTCCCGACTGGCCACAGAGCTACTCTAAAGGGCAGGACTGTGTGTGGCAAATACACGTCAGCGAGGACAAGCGCATCGAGCTGGATGTGCAAAT
Seq A exon
TTTGAACATACGCCACAATGACGTTCTCACTCTGTTTGATGGCCATGATCTGATGTCGCACGTGATTGGTCAGTACATGGGCTCGAGAGAAAGGTTCAGGGTTGTATCGGGAGGTTCGGAGGTCACCATTCAGTTTCAGAGCGATCCCGATGACTCCACGTTTATACTGAGCCAAGGCTTTCTCATCCACTACAGAG
Seq C2 exon
AAGTGGAGCCGAATGACACGTGTTCTGCTCTTCCACAAATTGAGTTCGGCTGGAGCAGCTCCTCCCACCCGTCTCTGGTCAGAGGAAGTGTGTTGACCTATCAGTGTCAGCCGGGTTATGATATCGTCGGCTCTGACATCATTACCTGCCAATGGGACCTCACTTGGAGTAACAGCCCGCCCACCTGTGTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076052-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(40.4=93.6)
A:
PF0043115=CUB=PD(58.7=95.5)
C2:
PF0008415=Sushi=WD(100=84.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTCACAGATCCAGTGGG
R:
TCATAACCCGGCTGACACTGA
Band lengths:
247-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]