MmuEX7008301 @ mm10
Exon Skipping
Gene
ENSMUSG00000069053 | Uba1y
Description
ubiquitin-activating enzyme, Chr Y [Source:MGI Symbol;Acc:MGI:98891]
Coordinates
chrY:826371-828931:+
Coord C1 exon
chrY:826371-826451
Coord A exon
chrY:826762-826917
Coord C2 exon
chrY:828766-828931
Length
156 bp
Sequences
Splice sites
3' ss Seq
GATGGTTTACCAACTTCTAGGTA
3' ss Score
6.5
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CACCAGAACCGTTATGATGGGCAAGTGGCTGTATTTGGATCAGACCTACAAGAGAAGCTTGGCAAGCAGAAATACTTCCTG
Seq A exon
GTAGGTGCAGGTGCCATTGGCTGTGAGCTGCTCAAGAACTTTGCCATGATTGGCCTCGGCTGTGGGGAGGATGGAGAAATCACAGTTACAGACATGGACACCATTGAGAAGTCAAACCTGAACAGGCAGTTTCTCTTCCGTCCCTGGGACATCACA
Seq C2 exon
AAATTAAAGTCTGAGACTGCTGCTGCAGCAGTGCGTGACATAAATCCACACATCAGGATATTCAGCCACCAGAATCGAGTAGGCCCAGAGACAGAACACGTCTATGATGATGACTTCTTCCAAAAGCTGGATGGTGTGGCCAATGCCCTAGACAATGTGGATGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069053-'10-16,'10-14,16-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(4.1=22.2)
A:
PF0089916=ThiF=FE(35.2=100)
C2:
PF0089916=ThiF=FE(37.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAACCGTTATGATGGGC
R:
GCATCCACATTGTCTAGGGCA
Band lengths:
244-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types