MmuINT0007738 @ mm10
Intron Retention
Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:120514536-120520207:+
Coord C1 exon
chr7:120514536-120514833
Coord A exon
chr7:120514834-120519960
Coord C2 exon
chr7:120519961-120520207
Length
5127 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CATTTTCTTTTTTATTCTAGGTG
3' ss Score
11.49
Exon sequences
Seq C1 exon
GTTCCACTTTACCGCCAGCAATTCTATTCCCTGTTTATAAAAAGAGCACTATTCATTAGCCGCAACTGGAAGTTCATGCTACTGCAGATAATAGTAGTTATGGTTGTCACTACATACCTCTTATTAGCTCTGCATTTAAATAATAATGATATACCTGAAAGGGAACTGAATTTGAGTCACTATGGTAGAACCATTGTACCTTACTCAACTTCAGGGAATTCTGATTTGGCTCTGAATCTCACAAAGAACCTGAATATTTTTCTAAAGTCAAAAAATCAAAACTTAAGAAAAATAAGAG
Seq A exon
GTAAGATTTGTTTGTTTTCAAAAAGAATCAACTACTACTCTATAAAGACCTACTTATCACTTGCAATGGATATAATTATGGTATTTAACTACTTGTTTCTTTCCCATCCCACCAGTTACCAGTATCTTAGAGGTAGCTAATCAAAAGCAAAATATACACTTAGACACAACTGTCCATAAGTCAGTCATTGGTGGAGACTTTTTTGGCTGACTGTGTCTCTGCTAATTTCATCACTCTTCATGGGGGTGGGAAAGATGAAAATATGGATCTGCTGTGCAATTTAGCATTTTAAGTTTTATTCTCATTGAAAGACTACTGTTATCTTCCGGAGCTCTCACAGCGTGGCTTGTTGGTTCCTGTGTGAAGACTATCCTTTTTAAAATTAGTCATTCTGTAAACCAATGGCTGTAGAGTTAATTGACTTCATAATTAATTTCTGAAGATGATGTAGGTAATTGTTTTGTTCAATTGATTTGCTCAACATGTACCCTTAGTAAGAACCATAAGTGAACATGTTCTCTGTATTTATTAATGCTAAAAACAATGATCTTAGCTAACTTGTTCAATATCTATGCTATTTGAAAAGTGCAAAACCTGGCCTATTATGAATTTGAACTTTGGGGAAACAATTTTTTAAAGTCAAGCATTTTATAATACTAAACATTAGCCAAAAGCACAGAACAAACTGGAGTTTGACTATTTGAAGAAAATTGTGGGACCGCTGTAAGAATAAGGTCTATAGCACTGTAGCTTGGGGTTTCTCTCTTTACCCATTCTCACTGGCTCAGTAGAACTCAACAAGACCCATTAATAGCCTTGAAGCTGTCAAAAAGAATAACAGTCCAGGAGCTGGAAGTCTACAATAAAAGGGAGATGAAAGGGAAAAAAAAAAAGGATAACAGACACATGGCTGACCAAACCAGTAGAAGCTGAGCATAAAAATAAATGCAGTATTATTTATTAAGTTTAACAGAGAAATCTGTACACTATACAGTATGTAGGAATATAATATTTACAAGAGTTGATCCACATAGGTTTCTAAACAAATAAGGAGAAACATTTTTACAGAAAAAGAAAGAACAGCAGCAGAGTAATTAGCCTGTACAAATTGTTAAAATATGTATCATAAGTAACCACTTTTCAACATAAAAGGAAAGAAGTTATGGAAAGAAGTTTTGGACTGAAGTATGCCCACCCCCACAATGTTAAAATCCCAACTACAAGTGTCTTGTTTACTATATTTGTAGGTAAGATTTTGAAGTTCTAATTAAATTTACATTAATTTAATTAATTTGAAATTCTAATTAAATTTTCTACTGGCTGGTTTTGTGTGTCAACTTGACACAAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGACCCAGCTGTAAGGCATTTTCTCAATCAGTGATCAAGTAGGGAGGGCCCATTGTGGGTGGTGCCATCTCTGGACTGGTGGTCTTGGGTTCTATAAGAAAGCAAGCTGAGCAAGCCAGGGGAAGCAAGCTGGCAAGAAACATCTCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGGCCTGTGTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAATGTGGAAATGTAAGCTGAGTAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGGTGTTTGTGCAGGAATAGAATCCCTGACTACGACAAATTTAAACCAACATAGGACCCAATTCTGTGACTGCTGTTCTTATACAAAGAAGAAGTGGGAACTGGAGAGATGGCTCAGCTGTTAAGAGCTCTTGCTGCTCTTCCAGAGGACCCAAGTTCTTTCTAACCCCTATATCAAGCTACTCAACTGTCTCCAGGGGATCATATGCCATTTTATGGCCACTGTGAGTACACACCTGGCATATACATACATAGACACACATAATTTAAAATTAGAGAAGGAGGTAGATGTAAACATGCATGTGGAAAGGAAAGACCATGCAAAGACACAGACAATACTGCTGCTGCCTAAAATGTAAGGCGAAAGTATCAAAAGAAACCAAACCTCGCATAACTAACCTCAGACTACTAGACTTCAACTGAAAAATAAACTTCTGTTGCTTCAGTCATCCAATCTTGAGCCTGAGAAAATAAAGATACATTTTGGTACCCGGAAGTGAGTGCTGTATAGCATATACTCAAGAGTATAGAACTGGCTCTTGAATAATGTAACAAGAGGCTTATAGAGTTTGAAAATATATGGTAGAAAGAATTCTAGTTTTGAAAATACTTTGGGAAAATACTAGAGATGATTCTGAGGAGTATGAATACAAAAAAAAGAAGAAAGCTTTAAAGAAAAATTTTATCTTCAGAATAGATTATCATGAAGATAATATAGTTGAAATATGAGCATTAAGGATGCTCTGATTAGATATCAAACAGTAATAAGGAGCACATTATTAAATTAAAGGAAGAGGCAAATAGTGGATAGAGAGATGGCTGGGTGACTAATAGCACTTGGTGTTCTTCCAGAGGACATAGGTTATGTTCCCAGCACCCACTTGGTGGCTCACAAATACCTGTAACCTAAATTCCAAGGGATCCAATGCCTTTCTCAAGCCTCTGTGGTCACCATGCATGCAAGAAGAGCACAGAAATCCATGCAGGCATAAAACAAAAACAACCCATATACATTGAATTTAAAAATAAATTCTAAAACATAAGAACACAGAAGCAAATAACATGATTTAATTGTATTCTGCTACTTTGTGGAAAGTAGAACATGTAAGTGATGAAGATAGTTAGCCAGTGTTATGGGTTGTCCTTACCACCTATAGTAAAATGTAAAGAGAACTAGATAAAGGATGAAATATTAAGCAAAAAGGAAAGATGTAAAGAGAAAATTTTCACTATATCCATACTTTGAAAAGTAAAATTTGAGAAGATATTCTGTACAACTCACCAGTATGTTTGAACAATTTATTTAAAATATATTGTTCTGTGACTCTTGTCTCAAAATAAGACATCCAGGAAGGCTGCTTGGCTGATAGTATTCCATATAACAGCCATTCCAACTTCAAATATGTGTTTACATCAAGAAAAGAGAGGACTGACAAAAGTGGCTGATATGGCTGCAGAGCTCTCATGGCCACCACATGTTTTAGGCCTAGGAACTAAAGCTAGGTTAGGGCCAGAATGCTATATATAATACCAGCTACATAAGAAGTAGGTCTACCACCAAGAATAGGATAGGTAAAGTTACTTGATTAGCACAGAAGGCAGGGCAACCAAAGTAGATTGCTTGTTTGGAATCAGAATATCTGTGCTTTATCAAACAATACATTTCTGTTATGTCTTTTTTTAAGGTTATAATGTAATTGTATTTCTCCCTTTCCTTTTCCAAACTCTGTCCCACTCTCCTTAAAATTCATGACCTCTATTTTGACTCACTGTTTTACACACACACACACATGCACGCATACATGAATGCACTCATGGAGTTACATGAATTTCTAAATATAACCTACTCAGTCTATATAATGTACTTGTGTCCTGTTTTCAAGGCTGACCATTTGGCAGTGGACAAACAATTAGTGTCCTCTTCTCCAGGGAGGACCACCTCTGAGCTTTACTCAGTTGCCTGTGGTTCTCCATGTAGAACTGAGGCGTTGTGGACTTTTCCTCACCCACCTTTGCATGTCATTCTTGTTCACCTTATGTTTGGGTAGCCACATTGGTGAGGCTTTATGGGTATGGCTTCTGCTATGTCTAGGACACATAGTCTCACAGCAAACTCTCTGTTCCTCTAGGCCATACAATCTTTCCACCTCATCTTCTACACTGTTCTCCAAGCCTTAGGTGTGTGGGAGTGTTTTGCAGATATATCCATTAGTACTAGTCTCCACAACTCTGCATTTAGATTGGCTATGGTTTTCTGTAGTGCTCTTCATCCACTGCAAAGAGAAGTTTCCTGGATGAGGAGTGAAGACTCCACTTAACTATGGGCATAAGAACAAATGTTTATAAATTGTTGTCAGGGATTATGCTGGTTTAAAATTAATGGTTGTAGATTATCTTCCAATGTGGGATTATAATGGCCCAGGATTACAGAGGAAAGTCTAAGAGAGCTTTAGCCCCAGATACCTCAGATGAGGACAGGAACCTGGCTCTCTCCCCTCTCCTAACCTGATGCCATGAAGCCAGCTGCCCCACCATCAACCCTAGTAAGAATTTACTACCCTGACAGTTAACCAGGCTTCACTCCTTGTTTGAACTATATCCATACATACTGTGGACACATAAGGTGTATACCCCACCCCACTTCTGGACCCTATAGTCCCTGAGTTCACATATAAAGCATCTTCCAACACCCTTGTCCTGGCCAGTTGACATGGCCAACAAACCTTGTCCCAGAGACCCTGGCCACCTCCCCAGGGGCATAAATATGCCCCCCCCAATAAACAGAACCAGTTCTCTGAAGCTGTTCCTAGATGTGTGTTCTTTTCCCATGTACTTACCACTGACCAAGATCCTTCCTGCAACTGGCTAAACTTTTTTCTCTCTCTCCAGCCCAGCATAGTGCACAAGTGACCTAGCTACTCCAAGGGAGAGAAGTAGACACAGGCCAGCAGCTTACACCCAGCATGGCTGAAACAGGACCTCCAGTAGTTATAGGCTAATTGTAAAATTTATACAGAAATGCAAGTCAAAAGGAATAGCCAAAGCAACTCTTTAAAATAATAAACTATGCTTATTCTTGACAGTTAAGAAAAATATATTCTTAAACAAGTCATAGGGCTGCATATCTTCAATTCCAGCACTTGGGGAATCTGTGAGTTTGAGACCAGCCTCATCTACACAGAAAGTTTCAGGACATCCAGGGATACATAGAGAAAGACTGTCTCAAAAAATATATTCTTAACATATGATTGGGTTATGAATTATACAGTGAGATCATTGTAAAATTAATGATGGAATAAAATTATTGAAGAAAAACATTCATTTCCAGAATTTGGAAAACAAAATGGTAAGTGGAGAAATAAACCCCACAGCTTTATAAGATACATTCTTCCTAATGTAGGTTTTAGGTAATATACTACATGTTGGCTCACTGGCATTTTCTTTTTTATTCTAG
Seq C2 exon
GTGATATGAATGATTACATATTAAAAAATAAAGATTGTCACACCTTCTGCCTTGTTGCACTTTCTATTAAAGTTGAGAGAAATAAAACAGTGCTCACTATTTTCTTCAATAATGAAGCATACCACTCACCTGCAATATCTCTGTCAATATTAGACAACATTCTTTTTATGACACTTTCTGGCCCTGATGCTTCCATTACTGTCTTCAATAAGCCGCAACCTCTCCCTCATTACGGTTCGAACATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900:ENSMUST00000120490:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.7=77.0)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types