MmuINT0007995 @ mm10
Intron Retention
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:80002831-80003333:+
Coord C1 exon
chr10:80002831-80003052
Coord A exon
chr10:80003053-80003131
Coord C2 exon
chr10:80003132-80003333
Length
79 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
TGATCCATCTTTCTCTGCAGAGC
3' ss Score
10.81
Exon sequences
Seq C1 exon
CTAGGGAACATCCTTCCTTACAGCCACCCGGTTGTAATCTTCCTTTTCTTGGCGGCCTTCGCGGTGGCCACCGTCGCTCAGAGTTTTCTGCTCAGCGCCTTCTTCTCCAGGGCCAACCTGGCAGCAGCCTGCGGGGGGCTCGCCTATTTTGCGCTCTATCTGCCCTACGTACTGTGTGTGGCCTGGCGCGAGCGCCTGCACCTGGGCGGACTCTTAGCTGCG
Seq A exon
GTAAGGGGCATTCCGATCTGTGTAAGGGGATAGACACCCCCAACGTGTTGCCAACTCCCTGATCCATCTTTCTCTGCAG
Seq C2 exon
AGCCTGCTGTCCCCTGTAGCCTTTGGCTTTGGATGCGAAAGCCTGGCGCTACTAGAGGAGCAGGGAGACGGGGCTCAGTGGCACAATTTGGGCACAGGCCCCGCGGAGGACGTCTTCAGCCTGGCCCAGGTGTCTGCCTTCCTGTTGCTTGATGCCGTCATCTACGGCCTTGCCCTCTGGTACCTAGAGGCTGTGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722:ENSMUST00000132517:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(31.3=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(25.8=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTGCTCAGCGCCTTCTT
R:
GCTTTCGCATCCAAAGCCAAA
Band lengths:
181-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types