GgaINT1005121 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2830996-2831551:-
Coord C1 exon
chr28:2831330-2831551
Coord A exon
chr28:2831201-2831329
Coord C2 exon
chr28:2830996-2831200
Length
129 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
CACTGTTCTTGGTGCTGCAGAGC
3' ss Score
6.69
Exon sequences
Seq C1 exon
CTGGGAGACATCCTGCCCTACAGCAACCCGGCTGTCATCTTCCTCTTCCTCGGCACCTTCTCAGTGGCCACCATCTGTCAGTGTTTCCTCATCAGCACCTTCTTCCCCCGTGCCAACCTGGCCTCGGCATGCGGTGGCATCATTTACTTCTCTCTCTACCTGCCCTACGTGCTGTGTGTGGCATGGCGTGACCACGTCACCTTCCCACTCCGTGTCCTCGTG
Seq A exon
GTGAGCAGCCCCTCATTCCCTGCACCCCGATATCCCTTGGATGCGCTGGCTGTGGGGTCTGGGTGCTCAGGAACCCCTGCAGCCCCACGGCTGTGTTCTCCACCTGCACCACTGTTCTTGGTGCTGCAG
Seq C2 exon
AGCCTGCTGTCCCCAGTGGCCTTTGGCTTTGGTTGTGAGTACTTCTCGCTGTACGAGGAGCAGGGGGTGGGCATGCAGTGGTACAACTTGGGCATCAGCCCTGTGCCGGGAGACCCCTACAGCTTCGCCATGGCCATGGGGCTGCTGCTGCTGGACGCTGTCCTCTATGGGCTGGCAGCCTGGTACATCGAGGGTGTCCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(30.4=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(25.4=88.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACCATCTGTCAGTGTTT
R:
GCTGATGCCCAAGTTGTACCA
Band lengths:
256-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]