DreINT0000123 @ danRer10
Intron Retention
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5670433-5673640:+
Coord C1 exon
chr11:5670433-5670654
Coord A exon
chr11:5670655-5673435
Coord C2 exon
chr11:5673436-5673640
Length
2781 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
AAAGGCTTGTTTTCTCGTAGAGC
3' ss Score
5.99
Exon sequences
Seq C1 exon
TGGGGAGATATTTTACCCTACAGTGACCCGGCTGTTGTGTTCTTCTTCCTGGCTGCGTTTGCTACAGCCACCATCATGCTTTGCTTCCTCATCAGCACGTTCTTCTCACGCGCTAACCTGGCAGCAGCGTGCGGAGGACTTATTTACTTCACACTTTACCTGCCGTATGTGCTGTGTGTAGCCTGGAGGGAATATCTGACCAGCACACACAGGATCTTAGCG
Seq A exon
GTGAGATTTTTTCCTCTGCCGGCTTGACTCCACAGATCATATATAGTTGAAGTCAGAATTATTAGCCCTCTTGAATTATTAGCCCATCTGTATATTTTTTTTACCAATTTTTTCAACACATTTCTAAACATAATAGTTTTAAAAATTAATTTCTAATCACTTCAGTTCTTTTATCTTTGCCATGATGACAGTACAGATTATTTGACTAGGTACTAGATACTAGTATTCAGCTTAAAGTTACATTTAAAGGTCCCATGGAATTAAAATAAAGTTTTTTAGATGTTATTATCAGTAGTATTTGTTTTTTAGGATATCTATGAGCTAATGTGCCCCAAAACAGTGACAAAATTTGCATTTAGAAGATGTAAAACATGTAAAGCTTGTAATTTGGCACTTCCGGCCAAATGGATCAACTGTTATATTCATGTCACCTCACACAAAGTCCCTTTAAGGCAATTCATTTCACTCGGCGGCCATCTTTGAAACATTTCTCGGGCAGTATGCTAAGGCATTAGGTTTAAACAAAGAGCATAGGATCACCAAGAGGCGACACTCTAGTGTGATTTGGGAAACAGCCACTAGATGGCATGGTGGCCATTTTGAAATGAAAATTCCAATAGAACAACAGCATATTATAAGTCAGTAAATAAACTATTAAAAGTACTGATGATTGTGATAGTAATGTTGTATTGTCGTCTTTTGGGTTGTATCTCAGCCTTAATGCGCTTTTTAAATAAATAAATAAATAACAAAGCAGCTGCTTGCCATCGTGAAAGATCCAATGGTTCTATTGAGTGTTGCCTCTTGGTCATTCAAAGCTCTTTGGTTTGAATGAGGAAACATCAAATTCCCCATTCAAAAACTACTTGCCAAGTTTACAATTACATTTCATGTTACGAATAACCAATAAAATTAAACAGCAACTATTTAGTTTCATTTCTAAATGTTCATATAACAAAAAATCTGCAGAAACTTAAGTCTGGTCCGAGCCCCTCCCCCGAAGAATTATCATTCTAAAGTGATTGCTGATTGGCTCCTATGCTAGAAGGCGGGGCTTCATTCGCCATATTGACAGATTCACTTTTTCCCATTCAAAAGTGTACGAGTGACACGTCTTGTGTATCATATAGTCTTTGTCTCACACTACAGACTATCATCACATCATAACAAATCAAATGCTCTCTAGTATCTGACATGGGCCGCCCCCTTCAAGACGCTTCTCATTTGCTTTTCATTTTAATGCACTTGAGTTCAACCATCAGCTCAAAACAAAACACTATTGGCTTTTTTTTTAAAAGGGGAGGAGCTACATTGTTCCACCTTCTCATCATGTTTCGGTTGAGATTACGTGAAATGTAGAATAAAAATGTATATTTAAAAGCACTTCATGGGACTTTTAAAGACTTAATTGGGTTAATTAGGCAAGTCATTGTATGATGCCGCAGTCACACTAGAGTTTGAGCTTGCAAAATTCTGTCGTACAGTGCTGCGAAAAGAAGCAGGATTAAACAAGATGATTACACATCAAAAAAAGCGAACGATTGGTCCATGTTTTAAATTTCTGTTTAGGGAGGTCATGTTTTGATCCTCAATTGGTCTCACGCAATCATATGATGTGATTTTGCAGGTCAGAGTTCACCAAGATTAAACATTCCAATGCAGCGAACTGCCAAACCTGCCGCATGACCTTGCATTTCCGCTCTGACGCGATCACGTGCGTATGAATGGAAGTCTATGGGGAGAAAAGTCCAGTGTGACCGCAGCTTAAGGATGGTTTGTTCTGTAGACAATCAAAAAAAATTTGCTTAGTGGAGCTCAAAATATTGACCTTAAAATGGTTTAGAACTATTAAAAACTGCTTTTATTTTACCCGAAATAAAACTTTAATCCGAGAAAAAACATTACTGTGAAAACTGCCATGCTCTGTTAAACATAATTTGGCAAATATTTGAAAAAGAAAAAAAAAAAAACACTGGAGGGATAATAATTGTGACTTCAACTGTAATGCTGCGTTCGCGATACGTGTAAATGGCGCGGCGCGAATGACGAGAATTGCGCAGTGCGCATACCGCGAATGGCGTGGCGCGAATTGAGCGTTTTGCACGTTTGATGCGCGTTTCGCTCGCGTTCGAAAATCTGAACTTCAGCGGACATTCGCGCCGCGTTAACCAATCAGGAGCTTGCTCTTGTGGGGGCGTGATTGTGATGTATCGCCTGTTGTCAGTGTCCCAGGTATAAATCCCCCAGCAGACACCGACAAGAAGGTCATCAAACGGGGCTGGGCTCAGTCAGAAGCACCGCTGAAAACCTCCATCAGCCAGGTTCAGTATCTGGAGGAGTCTATGAGCTTAAAGAGCTGGATGCACCTCTGAAAGGATGTAGTGGACTCAAACACAGCTCTAAACATATTGACGCTGTTTATCATCCTTCCTAAAGCACATAAACACTGTTATTTTCTTCATAAAATCCATGTTAGCCCTTTAGCTATGAAGCTAGAGTCACATAGCAGACAGAAGCCCTGCCCATCACGCGAATCCGCGTCTGTTTTGAAGTAAATTTGACACGCGAATGAAGCGGGGTTTGGCGCGTAAATGAAGCGAGTAACCTCAAATGTTCACCCGACTATTTACGCGCAAATAGCGCGATTTATCCGTGCGTTCCGCGTCTGGTATGAACACAGCATAAGAGATGTGAAGAGTGTTAGGATGTGAAAACATAAAATCACTATCTGAATTAATCCTGCAATACATTTGTCTAAATGAAAGGCTTGTTTTCTCGTAG
Seq C2 exon
AGCTTCCTGTCTCCTGTGGCCTTTGGTTTTGGCTGTGAGTATTTCTCTCAGTATGAAGAGCAGGGTGTGGGGATCCAGTGGTTTAACTTGAAATCCAGCCCCATGGAGGGAGACACCTACAGCTTCAACACCTCCATCATGATGCTGTATGCAGATGCTCTAATCTATGCACTGGCCACTTGGTACATTGAAGCTGTCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221:ENSDART00000165385:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(22.9=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(19.1=88.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]