MmuINT0008002 @ mm10
Intron Retention
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:80005643-80006175:+
Coord C1 exon
chr10:80005643-80005780
Coord A exon
chr10:80005781-80005987
Coord C2 exon
chr10:80005988-80006175
Length
207 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GGTTGCATCCCTATGTCCAGGTC
3' ss Score
4.89
Exon sequences
Seq C1 exon
GTGGAATGCAGAGAAAACTTTCTGTGGCCATTGCCTTTGTGGGTGGCTCTCGTGTGGTCATCATGGACGAGCCCACTGCTGGTGTGGACCCCGCTTCCCGCCGTGGCATTTGGGAATTGCTACTTAAGTACAGAGAAG
Seq A exon
GTAAGAGTTGGGAGATGGAATGGAATGGCCTGGGGGGTTCCCTTGGTTTCTGTTTGAGGGACCAAAAAAACGTTTCTAGCTATGAAAAGCTTTCTAACTATGCTGGGGTGGGGTTTTGAGGATTGTACTGGAGTTTGTTGCATAGGGTTGCCTGGGTCTTTAACCGATGAGTCCAATGACTCACATGGGTTGCATCCCTATGTCCAG
Seq C2 exon
GTCGGACACTGATTCTCTCCACTCACCACCTGGATGAGGCAGAGCTCTTGGGAGATCGCGTGGCCATGGTGGCAGGTGGCTCTTTGTGCTGCTGTGGGTCCCCGCTTTTCTTGCGCCGACACTTGGGCTGCGGTTACTACCTGACCCTGGTGAAGAGTTCTCAGTCCCTCGTCACCCATGATGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722:ENSMUST00000132517:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(17.9=55.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCCTTTGTGGGTGGCTC
R:
CATCATGGGTGACGAGGGACT
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types