RnoINT0010363 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12751557-12752216:-
Coord C1 exon
chr7:12752079-12752216
Coord A exon
chr7:12751745-12752078
Coord C2 exon
chr7:12751557-12751744
Length
334 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GGTTGGGTCCCTACGTCCAGGTC
3' ss Score
4.8
Exon sequences
Seq C1 exon
GAGGAATGCAGCGAAAACTTTCTGTGGCTATTGCCTTTGTGGGTGGCTCTCGTGTGGTTATCATGGACGAGCCCACTGCTGGTGTGGACCCCGCTTCCCGCCGTGGCATTTGGGAATTGCTACTCAAGTACAGAGAAG
Seq A exon
GTAAGAGTTGGAAGAGGTGATGGGATGACCTGAGGTTCCCTTGGTTTCTGCAGAAAAGGTTTCTAACTATGAGAAGCTTTCTATGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGTGCAAGACCCTGGGTTTGGTCCCCAGCTCCGGAAAAAAAAAAGAGAGAGAGAGAGAGAGAAGCTTTCTAACTCTGCTGGGATGGGGTTTTGAGAGGCGCGCAGGAGTTTGCTGCATTGGGCTAGGCGATTCCTGGGAGAGACACTGCTGCCTGGGTCTTTACCTGGTGAGCCAGGTGACTCACATGGGTTGGGTCCCTACGTCCAG
Seq C2 exon
GTCGGACACTGATCCTCTCCACTCACCACCTGGATGAGGCAGAGCTCCTGGGAGACCGTGTGGCCATGGTGGCAAGTGGCTCTTTGTGCTGCTGTGGGTCCCCACTTTTCTTGCGCCGACACTTGGGCTGCGGTTACTACCTGACGCTGGTGAAGAGTTCTCAGTCCCTTGTCACCCATGACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(17.9=55.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATGCAGCGAAAACTTTCTG
R:
TCATGGGTGACAAGGGACTGA
Band lengths:
318-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]