GgaINT1005125 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2829384-2829969:-
Coord C1 exon
chr28:2829832-2829969
Coord A exon
chr28:2829686-2829831
Coord C2 exon
chr28:2829384-2829685
Length
146 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CGGTGGCTCCGTGCCCTCAGGGC
3' ss Score
9.16
Exon sequences
Seq C1 exon
GCGGCATGCAGAGGAAGCTTTCTGTGGCCATTGCCTTTGTGGGCGGCTCCAAGGTGGTGGTCCTGGATGAGCCCACAGCCGGTGTTGACCCCTACTCACGCCGCAGCATCTGGGAGCTGCTGCTCAAGTACCGCAAGG
Seq A exon
GTGAGGGCTGGGGAGGGGGATCCCCGCTTCCTCTGTCTGCTGCGAGCCCCCAGCCCTACAGAAGCAGGGCGTGGGGGGAGCACTGTGGGGTGAGATGGGATCCAGAGAAAGGAGACCGGAGTGGGACGGTGGCTCCGTGCCCTCAG
Seq C2 exon
GGCGCACCATCATCCTCTCCACGCACTACATGGACGAGGCGGAGCTGCTGGGGGACCGCATCGCCATCATCTCGCAGGGCCGGCTCCGCTGCTGCGGGTCTCCGCTCTTCCTCAAGGCCAGGCTGGGCACGGGCTACTACCTCACCCTGGTCAAACGGGAGCGCACCGAGCTGGGAGCCGGCGGCCCCGGCCCCACCAAAAAGGTGCCTCCCCCTGGTTCCCCCCACCGACTCTCCATGCCCAGAGCCCCGTGTTGGATCCCTCTGCAGCACCCACCCACCCTTTGCTGCCCTTTCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(17.9=55.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGTGGTGGTCCTGGATGA
R:
TGACCAGGGTGAGGTAGTAGC
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]